bcbio-nextgen
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Getting started
User stories
Somatic (cancer) variants
Bulk RNA-seq
Counting cells and transcripts for inDrops3 data
PureCN analysis of tumor-only samples
HLA typing
Small germline variants
3’ DGE
Structural variant calling
ATAC-seq
Methylation
Variant calling using bulk RNA-seq data
Detecting gene fusions with bulk RNA-seq data
fast RNA-seq
Disambiguation
smallRNA-seq
Infrastructure
Installation
Configuration
Parallel execution
Outputs
Common Workflow Language (CWL)
Cloud
Development
Misc
Users
Internals
Presentations
Teaching
Single cell RNA-seq analysis
Cancer tumor-normal variant calling
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bcbio-nextgen
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